jarvis.tasks.queue_jobs

Modules for job submission.

Classes

Queue

Construct HPC Job class.

Module Contents

class jarvis.tasks.queue_jobs.Queue(q_type='head_node', q_parameters={}, job_sub_cmd=None, job_check_cmd='', job_id='')

Bases: object

Construct HPC Job class.

q_type = 'head_node'

q_parameters

job_sub_cmd = None

job_check_cmd = ''

job_id = ''

head_node(submit_cmd=None)

Select if run on the head node, not recommended.

to_dict()

Convert class to a dictionary.

classmethod from_dict(d={})

Load from a dictionary.

classmethod pbs(filename='submit_job', shell='#!/bin/bash', nnodes=1, cores=16, walltime=None, queue=None, account=None, group_name=None, jobname='myJob', jobout='job.out', joberr='job.err', memory=None, email=None, pre_job_lines=None, directory=None, env=None, job_line='echo I am here', post_job_lines=None, submit_cmd=None)

Select if run using PBS script.

classmethod slurm(filename='submit_job', shell='#!/bin/bash', nnodes=1, cores=16, walltime=None, queue=None, account=None, group_name=None, jobname='myJob', jobout='job.out', joberr='job.err', memory=None, email=None, pre_job_lines=None, directory=None, env=None, job_line='echo I am here', post_job_lines=None, submit_cmd=None)

Select if run using SLURM script.